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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">kemsu</journal-id><journal-title-group><journal-title xml:lang="ru">СибСкрипт</journal-title><trans-title-group xml:lang="en"><trans-title>SibScript</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2949-2122</issn><issn pub-type="epub">2949-2092</issn><publisher><publisher-name>Kemerovo State University</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.21603/sibscript-2024-26-4-567-575</article-id><article-id custom-type="elpub" pub-id-type="custom">kemsu-5667</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>Междисциплинарные исследования языка</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>Interdisciplinary Linguistics</subject></subj-group></article-categories><title-group><article-title>Применение методов обработки естественного языка для прогнозирования перспективных направлений использования формальных онтологий в биомедицине</article-title><trans-title-group xml:lang="en"><trans-title>Natural Language Processing Tools for Predictive Modeling of Advanced Trends in Formal Ontologies in Biomedical Sciences</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-0450-5156</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Шарнин</surname><given-names>Михаил Михайлович</given-names></name><name name-style="western" xml:lang="en"><surname>Charnine</surname><given-names>M. M.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Scopus Author ID: 6504713775</p><p>Москва</p></bio><bio xml:lang="en"><p>Mikhail M. Charnine</p><p>Scopus Author ID: 6504713775</p><p>Moscow</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-7371-9655</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Калинин</surname><given-names>Степан Сергеевич</given-names></name><name name-style="western" xml:lang="en"><surname>Kalinin</surname><given-names>S. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Scopus Author ID: 57206675409</p><p>Москва</p></bio><bio xml:lang="en"><p>Stepan S. Kalinin</p><p>Scopus Author ID: 57206675409</p><p>Moscow</p></bio><email xlink:type="simple">rage_of_gods@inbox.ru</email><xref ref-type="aff" rid="aff-2"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">Федеральный исследовательский центр «Информатика и управление» РАН<country>Россия</country></aff><aff xml:lang="en">Computer Science and Control Federal Research Center, Russian Academy of Sciences<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru">Международный славянский институт<country>Россия</country></aff><aff xml:lang="en">International Slavic Institute<country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2024</year></pub-date><pub-date pub-type="epub"><day>14</day><month>08</month><year>2024</year></pub-date><volume>26</volume><issue>4</issue><fpage>567</fpage><lpage>575</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Шарнин М.М., Калинин С.С., 2024</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="ru">Шарнин М.М., Калинин С.С.</copyright-holder><copyright-holder xml:lang="en">Charnine M.M., Kalinin S.S.</copyright-holder><license license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.sibscript.ru/jour/article/view/5667">https://www.sibscript.ru/jour/article/view/5667</self-uri><abstract><p>В работе представлены возможности использования методов обработки естественного языка для прогностического анализа и обзора перспективных направлений использования формальных онтологий в различных областях науки и практики. Выбор формальных онтологий в качестве объекта прогностического исследования обусловлен тем, что они помогают более строго формализовать признаки объектов в различных предметных областях, что дает в дальнейшем возможность для более успешного использования программ машинного обучения для автоматического выявления закономерностей и взаимосвязей между этими признаками. Для анализа перспективных трендов в развитии использования онтологий был использован эксперимент на основе метода машинного обучения и прогнозирования с помощью алгоритма CatBoost в сочетании с методами извлечения информации из текстов и алгоритмом кластеризации лексических единиц. При этом использовались векторные представления соответствующих лексических единиц, отражающих тот или иной тренд частной области знания, между которыми вычислялась мера близости на основе семантического расстояния. В результате эксперимента были выделены четыре наиболее перспективных направления, в которых возможно применение формальных онтологий: связь генотип – фенотип, персонализация, алгоритмы кластеризации и совместное управление. Для каждого направления приводятся собственные ключевые слова, отражающие прогнозируемые тренды развития данной конкретной области, а также анализируются примеры наиболее характерных научных работ (статей), отражающих эти тренды.</p></abstract><trans-abstract xml:lang="en"><p>Natural language processing methods can be used to predict advanced application trends in formal ontologies. Formal ontologies help to formalize the characteristics of objects in various domains. As a result, machine learning programs identify patterns and relationships between these characteristics. The article describes an experiment based on machine learning methods in combination with text search methods. It involves the CatBoost algorithm for predictive modeling and clustering of lexical items. The vector models of the corresponding items reflect a trend in a particular domain of knowledge; proximity between them was calculated based on the idea of semantic distance. The experiment revealed four advanced areas for formal ontologies, i.e., genotype – phenotype; personalization; clustering algorithms, and collaborative task management. Each area that represented the predictable trends of development in this particular domain was provided with keywords. The article also contains a review of most popular scientific articles on these trends.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>обработка естественного языка</kwd><kwd>формальные онтологии</kwd><kwd>библиометрический анализ</kwd><kwd>прогностическое исследование</kwd><kwd>метод машинного обучения</kwd><kwd>векторные представления лексических единиц</kwd><kwd>кластеризация лексических единиц</kwd><kwd>алгоритм CatBoost</kwd><kwd>тренды научного развития</kwd></kwd-group><kwd-group xml:lang="en"><kwd>natural language processing</kwd><kwd>formal ontologies</kwd><kwd>bibliometric analysis</kwd><kwd>predictive modeling research</kwd><kwd>methods of machine learning</kwd><kwd>vector models of lexical items</kwd><kwd>clustering of lexical items</kwd><kwd>CatBoost algorithm</kwd><kwd>trends in intellectual development</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Бова В. 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